Semantic Web, UMBEL

New release of UMBEL: v072

umbel_medium.pngI am pleased to announce that we resumed our work with UMBEL. We just released the version v0.72, which is based on the OpenCyc version 2009-01-31. This new version is intermediary and has been created mostly to check the evolution of OpenCyc vis-à-vis UMBEL. Within the next month or so, we will release a new version (v.080), which will introduce a major new concept that should help systems and users manipulating the entire UMBEL Subject Concepts structure.

For them who want to know what changed between versions v071 and v072, here is CVS file that list all the changes between the versions. There are four columns: (1) source node, (2) attribute, (3) target node and (4) version number. This file list all triples that are present in a version, but not in the other. So, you have all changes (nodes & arcs) between the two versions. Mostly all the changes come from internal changes to OpenCyc. We did fix a couple of things such as removing cycles in the graph, etc. But 99% of the changes come from changes within OpenCyc.

Finally note that the web services endpoints will be updated with this new version of UMBEL subject concepts in the coming week along with the dereferencing of their URIs. Stay tuned!

Semantic Web, Bibliographic Ontology

The Next Bibliographic Ontology: OWL

The Bibliographic Ontology‘s aim is to be expressive and flexible enough to be able to convert any existing bibliographic legacy schema (such as Bibtex and its extensions, MARC, Elsevier’s SDOS & CITADEL citation schemas, etc.) and RDFS/OWL ontologies to it.

This new BIBO version 1.2 is the result of more than one year of thinking and discussions between 101 community members and 1254 mail messages. The project’s first aim of expressiveness and flexibility is nearly reached. BIBO’s ongoing development is now pointing to a series of methods and best practices for mature ontology development.

Some BIBO mappings between legacy schemas have been developed, but this trend will now be accelerated. More people are getting interested in BIBO’s ability to describe bibliographic resources. Some people are interested in it to describe bibliographic citations; others are interested in it to integrate data from different bibliographic data sources, using different schemas, into a single and normalized data source. This single data source (in RDF) can then become easily queried, managed and published. Finally, other people are interested in it as a standard agreed to by an open community, that helps them to describe bibliographic data that aims to be published and consumed by different kind of data consumers (such as standalone software like Zotero; or such as citation aggregation Web services like Scirus or Connotea).

With this BIBO 1.2 release, much has changed and been improved. Now, it is time for the community to start implementing BIBO in different systems; to create more mappings; and to complete more converters.

Design Redux

As you may recall from its early definition, BIBO has been designed for both: (1) a core system with extensions relevant to specific domains and uses, and (2) a collaborative development environment governed by the community process.

These design imperatives have guided much of what we have done in this new version 1.2 release to aid these objectives.

BIBO in OWL 2

The new version of BIBO is now described using OWL 2. In the next sections you will know why we choose to use OWL 2 as the way to describe BIBO in the future. However, saying that it is OWL 2 doesn’t mean that it becomes incompatible with everything else that exists. In fact, it validates OWL 1.1 and its DL expressivity is SHOIN(D); this means that fundamentally nothing has changed, but that we are now leveraging a couple of new tools and concepts that are introduced by OWL 2.

As you will see below this decision results in much more than a single update of the ontology. We are introducing an updated, and more efficient, architecture to develop open source ontologies such as The Bibliographic Ontology.

New Versioning System

OWL 2 is introducing a new versioning and importation system for OWL ontologies. This feature alone strongly argued for the adoption of OWL 2 as the way to develop BIBO in the future.

This new versioning system consists of two things: an ontologyURI and a versionURI. The heuristics to define, check, and cache an ontology that as an ontologyURI and possibly a versionURI are described here.

BIBO has an ontologyURI and multiple versionURIs such as http://purl.org/ontology/bibo/1.0/, http://purl.org/ontology/bibo/1.1/, and http://purl.org/ontology/bibo/1.2/.

Right now, the current version of the ontology is 1.2. This means that the current version of BIBO will be located at two places: http://purl.org/ontology/bibo/ and http://purl.org/ontology/bibo/1.2/.

The location logic of ontologies is described here. What we have to take care here is that if someone dereferences any class or properties of BIBO, it will always get the description of that class or property from the latest version of the ontology. This is why the caching logic is quite important. The user agent has to make sure that it caches the version of the ontology that it knows.

What is really important to understand is that the URI of the ontology won’t change over time when we introduce new versions of the same ontology. Only the location of these versions will change.

Finally, the OWL 2 mapping to RDF document tells us that we have to use the owl:versionInfo OWL property to define the versionURI of an ontology. This is the reason why the use of this OWL 2 versioning system doesn’t affect the validity of BIBO as a OWL 1.1 ontology; because owl:versionInfo is also an OWL 1.1 property.

Now, lets take look at the tools that we will use to continue the development of BIBO.

Protégé 4 for Developing BIBO

We chose to now rely on Protégé 4 to develop BIBO in the future. We wanted to start using a tool that would help the community to develop the ontology. Considering that Protégé 4 Beta has been released in August; that it supports OWL 2 by using the OWLAPI library; and many plugins are already supported; it makes it the best free and open-source option available.

What I have done is to add some SKOS annotation properties to annotate the BIBO classes and properties to help us to edit and comment on the ontology. Here is the list of new annotation properties we introduced:

  • skos:note, is used to write a general notes
  • skos:historyNote, is used to write some historical comments
  • skos:scopeNote, is really important. It is the new way to target the classes and properties, imported from external ontologies, that we recommend to use to describe one aspect of BIBO. The scopeNote will tell the users the expected usage for these external resources.
  • skos:example, is used to give some examples that show how to use a given class or property. Think of RDF/XML or RDF/N3 code examples.

Finally, all these annotations are included in BIBO’s namespace.

OWLDoc for Generating Documentation

OWLDoc is a plugin for Protégé that generates documentation for OWL ontologies. In a single click, we can now get the complete documentation of an ontology. This makes the generation of the documentation for an ontology much, much, more efficient. Users can easily see which ontologies are imported, and then they can easily browse the structure of the ontology. Many facets of the ontology can be explored: all the imported ontologies, the classes, the object/data properties, the individuals, etc.

You can have a look at the new documentation page for BIBO here. On the top-left corner you have a list of all imported ontologies. Then you can click on facet links to display related classes, properties or individuals. Then you may read the description of each of these resources, their usage, and their annotations (scope-notes, Etc.).

Please note there are still some issues and improvements to do with the template used to generate the pages, such as multiple resource descriptions not yet adequately distinguished. We are in the process of cleaning up these minor issues. But, all-in-all, this is a major update to the workflow since any user can easily re-create the documentation pages.

Collaborative Protégé for Community Development

Now that it is available for Protégé 4, we will shortly setup a Protégé server and make it available to the community to support BIBO’s community development. We will shortly announce the availability of this Collaborative Protégé.

In the meantime, I suggest to use the file “bibo.xml” from the “trunk” branch of the SVN repository (see Google Code below). The Bibliographic Ontology can easily be opened that way using the “Open…” option to open the local file of the SVN folder, or by using the “Open URI…” option to open the bibo.xml file from the Google Code servers. That way, each modification to the ontology can easily be committed to the SVN instance.

Google Code to Track Development

As noted above, the BIBO Google Code SVN is used to keep track of the evolution of the ontology. All modifications are tracked and can easily be recovered. This is probably one of the most important features for such a collaborative ontology development effort.

But this is not the only use of this SVN repository. In fact, it as an even more central role: it is the SVN repository that sends the description of the ontology for any location query, by any user, for any version. Below we will see the workflow of a user query that leads the SVN repository to send back a description for the ontology.

Google Groups to Discuss Changes

The best tool to discuss ontology development is certainly a mailing list. A Google Groups is an easy way to create and manage an ontology development mailing list. It is also a good way to archive and search discussions that has an impact on the development (and the history) of the ontology.

Purl.org to Access the Ontology

Another important piece of the puzzle is to have a permanent URI for an ontology that is hosted by an independent organization. That way, even if anything happens with the ontology development group, hopefully, the URI will remain the same over time.

This is what Purl.org is about. It adds one more step to the querying workflow (as you will notice in the querying schema bellow), but this additional step is worth it.

General Query Workflow

There is one remaining thing that I have to talk about: the general querying workflow. I have been talking about the new OWL 2 versioning system, purl.org redirection and using the SVN repository to deliver ontology descriptions. So, there is what the workflow looks like:

[clik to enlarge this schema]

At the first step, the user requests the rdf+xml http://purl.org/ontology/bibo/. As we discussed above, this permanent URI is hosted by Purl.org; what this service does is to redirect the user to the location of the content negotiation script.

At the second step, the user requests the rdf+xml serialization of the description of the ontology at the URI of the location sent by the Purl.org server: http://conneg.com/script/. One of the challenges we have with this architecture is that neither Purl.org nor Google Code handles content negotiation with a user.

Thus, it is also necessary to create a “middle-man” content negotiation script that performs the content negotiation with the user, and redirects it to the proper file hosted on SVN repository. (If Purl.org or the SVN repository could handle the content negotiation part of the workflow, we could then remove the step #2 from the schema above and then improve the general architecture.  However, for the present, this step is necessary.)

Note 1: Take a special look at the redirection location sent back by the content negotiation script: http://…/tags/1.2/bibo.xml. This is a direct cause of the new versioning has the versionURI http://purl.org/ontology/bibo/1.2/. Considering the versioning system, the content negotiation script redirects the user to the description of the latest version of the ontologyURI (which is currently the version 1.2).

Note 2: Purl.org current doesn’t strictly conform with the TAG resolution on httpRange-14. However this should be resolved in an upgrade of the Purl.org system that is underway (the current system is dated as of the early 1990s).

At the third step, the SVN repository returns the requested document by the user with the proper Content-Type.

Conclusion

Developing open source ontologies is not an easy task. Development is made difficult considering the complexity of some ontologies, considering the different way to describe the same thing and considering the level of community involvement needed.  Thus, open source ontology development needs the proper development architecture to succeed.

I have had the good fortune to work on the this kind of ontology development with Yves Raimond on the Music Ontology, with Bruce D’Arcus on the Bibliographic Ontology, and with Mike Bergman on UMBEL. Each of these projects has led to an improvement of this architecture. After two years, these are the latest tools and methods I can now personally recommend to use to collectively create, develop and maintain ontologies.

Semantic Web, Zitgist, UMBEL

UMBEL Web Services Endpoints Released

After some delay, we are pleased to finally release the UMBEL Web services endpoints to the public. We have re-organized the Web services we introduced three months ago to add coherency and flexibility to the model.

The goal remains the same, but with a different flavor: these tools let ontologists and Web developers search, discover and use the UMBEL subject concept and named entity structures. The added flavor is that these Web services now fully embrace the HTTP 1.1 protocol and are provided via a series of well established data and serialization formats.

We now have RESTful Web services to add to our RESTful linked data. Pretty cool combination!

We are introducing two kinds of Web services: (1) atomic Web services and (2) compound Web services. An atomic Web service only performs one action: It takes some inputs and then outputs a resultset of the action. A compound Web service takes multiple atomic Web services, plugs them together in a pipeline model, and then takes some inputs and outputs a resultset arising from the compound action.

The communication between each of these Web service instances and the external World is the same: communication is governed by the HTTP 1.1 protocol. HTTP is generally RESTful and used to establish the communication, to determine mime type and serialization, to get inputs, to return status of the communication and possible errors, and to send back the resultset of the computation of the Web service.

That way, we can easily, within hours, programmatically pipeline these atomic Web services together to create new Web services. We can integrate external Web services endpoints into the same pipeline without modifying anything to the architecture. Status, errors and resultsets are propagated along the line, directly to the data consumer. This is the flexibility part of the story.

Now, how cool is that?

Overview of the UMBEL Web Services Endpoints

We are today releasing a couple of these atomic and compound Web service endpoints to the public, but others will follow in the coming weeks and months. Four families of Web services have been released that total seven Web service endpoints:

If you don’t know what UMBEL is, I would suggest you read a background information page that talks about the project.

The most important reading related to this blog post is the API philosophy documentation page that talks about the details of the design of this Web services architecture.

For Web developers that want to integrate these Web services endpoints within their application, an API documentation page explains how to communicate with these endpoints for each of the services.

Example of an Atomic Web Service

The Inference: Lister Web service is a good example of an atomic Web service. It takes a subject concept URI as the input and outputs a series of super-class-of, sub-class-of or equivalent-class-of classes for that concept. As an atomic service it does one thing and one thing only: Inferring relationships of a given subject concept URI.

Example of a Compound Web Service

The Reporter: Named Entity Web service is a good example of a compound Web service. This Web service displays full of information about a UMBEL named entity URI. However, not all the information returned by this Web service is directly computed by it. In fact, the information about broader and equivalent classes and subject concepts come from the Inference: Lister Web service. Results coming from this Web service are immediately integrated in the Reporter’s resultset. This is easily done considering that they share the same communication language (HTTP 1.1) and the same data and serialization formats (XML, RDF+XML and RDF+N3). This flexibility is priceless to quickly create resourceful compound Web services.

Conclusion

After some months to get the design right, we have finally released some of the UMBEL Web services to the public. These Web services can easily be integrated in current software architectures to leverage UMBEL’s vision of the World. The architecture underlying what we have released today will help to easily integrate UMBEL’s principles and concepts within new and existing projects. This will ultimately help people to quickly react to the changing World of needs and expectations of data users and consumers.

I hope you will enjoy using these new Web services, which Zitgist is freely hosting. The data you get from the Web service is open data and can be used freely with attribution.

Please do report any issues you may encounter. We also welcome any advice or suggestions that you would care to provide to enhance the overall system.

Semantic Web, UMBEL

Exploding DBpedia’s Domain using UMBEL

A couple of challenges I have found with DBpedia is that it is hard for a system to interact with the dataset and it is hard to figure out how to interpret information instantiated in it. It is hard to know what properties are used to describe individuals; and hard to know what the classes refer to. It is also hard for standalone and agent software to understand the nature of the individuals that are instantiated by DBpedia because the classes they belong to are generally unknown or poorly defined.

In the following blog post I suggest to use a method known as “exploding the domain” to try to overcome these difficulties of using and understanding DBpedia. This adds still further usefulness to DBpedia’s considerable value. This demonstration is based on the UMBEL subject concept structure.

As I will demonstrate below, this method consists of contextualizing classes in a coherent framework to explode their domains. By exploding the domain of a class, we link it to other classes that are defined by external ontologies. By exploding the domain of a class by linking it to externally defined classes, we also help standalone and agent software to understand the meaning for that class (at least if they understand the meaning of the classes that have been linked to it). Note that we are able to explode the domains by linking classes using only three properties: rdfs:subClassOf, owl:equivalentClass and umbel:isAligned.

First of all, let me give some background information about how DBpedia individuals and UMBEL named entities have been created, and how both datasets have been linked together.

How DBpedia individuals are instantiated

DBpedia is a dataset that is based on the well known Wikipedia encyclopedia. Basically DBpedia creates one individual for each Wikipedia page. Most of the individuals that are instantiated in this way are what we call a “named entity” in UMBEL’s parlance.

But to be instantiated, an individual has to belong to a class. DBpedia chooses to use Yago‘s classification system (that is based on WordNet) to instantiate those DBpedia individuals. This means that all DBpedia individuals belong to at least (theoretically) one Yago class. This means that all DBpedia individuals are instances of Yago classes (and in some rarer cases, they are also instances of classes defined in external ontologies).

How UMBEL named entities have been created

For its part, UMBEL’s named entities dictionaries come from different data sources. Currently, most all public UMBEL named entities also come from Yago (example: Aristotle), but many also come from the DBTune dataset (example: Pete Baron) or others. (UMBEL’s design allows more named entities to be plugged into the system as additional dictionaries at will.)

However, unlike DBpedia, we do not use Yago’s classification system to instantiate these named entities. And unlike Yago, we do not use the WordNet classes to instantiate the named entities either.

The current UMBEL subject concept structure is based on OpenCyc. This means that the relations between the classes that instantiate the UMBEL named entities come from the Cyc knowledge base.

So while we use Yago’s named entities (from Wikipedia) as a starting basis, we instantiate them using the UMBEL subject concept classes instead of the WordNet classes. So, basically, we have switched the WordNet conceptual framework for the UMBEL (or OpenCyc) one.

But, how did we create these UMBEL named entities, instantiated using UMBEL subject concept classes and based on Yago? Here is the linkage path:

Yago classes –> WordNet synsets <– Cyc collections <– OpenCyc classes <– UMBEL subject concept classes

Et voilà !

How UMBEL named entities are linked to DBpedia individuals

OK, so now how do we link UMBEL named entities to DBpedia individuals? It is simple. Remember that DBpedia individuals have been created from Wikipedia pages. Also remember that Yago individuals come from the same Wikipedia pages. We can then make the link between the individuals from DBpedia and the individuals from Yago based on Wikipedia URLs.

Exactly the same logic applies for linking DBpedia individuals to UMBEL named entities.

The end result of this linkage is that we have UMBEL named entities that are the same as DBpedia individuals. The difference is that the UMBEL named entities are now instances of UMBEL subject concepts: a totally different conceptual structure.

Remember that these named entities are contextualized in a coherent conceptual framework. And this characteristic means a lot for what is yet to come.

Web services to search and visualize these named entities

We created two new web services on the UMBEL web services home page (the user interface to these web services; the endpoints will be released later) to help people interact with these named entities:

  1. The “Search Named Entities Dictionaries” web service
  2. The “Named Entity Detailed Report” web service

The first web service lets you search amongst all publicly available UMBEL named entities dictionaries.

The second web service lets you visualize detailed information about any named entity.

This information page shows you the full scope of information about a named entity: which class it belongs to (subject concept classes as well as external classes); which other individuals, from other datasets, are identical to them; examples of web services that get queried with information about this named entity; etc.

Exploding the domain of Plato

Now that this background information has been established, let’s take a look at what is happening when we link DBpedia individuals to UMBEL named entities: how that actually works to explode the domain.

Let’s take the example of dbpedia:Plato. This individual is currently defined in DBpedia as:

  • yago:AncientGreekPhysicists
  • yago:PhilosophersOfLanguage
  • yago:PhilosophersOfLaw
  • yago:PoliticalPhilosophers
  • yago:AncientGreekVegetarians
  • yago:AcademicPhilosophers
  • yago:Philosopher110423589

Fine, but what does this mean? What if my system doesn’t know any of these classes? We, as humans, know that Plato is a person, a human being. But it is totally another story for a software agent.

What we want to do here is to explode Plato’s domain to try to find a meaning that my software system can understand.

In UMBEL, the “Plato” named entity is defined as an umbel:Person and an umbel:Intellectual. If you take a look at the detailed report for these two subject concepts, you will be able to see in the section “Broader Subject Concepts” the super-classes that Plato belongs to. So we know that Plato is a social being, a homo sapiens, etc. This is basically what happens with Yago too, except that the conceptual structure (the way to describe the entity) differs.

However one thing that is happening is that we exploded Plato’s domain with classes defined in external ontologies. As you can notice in the sections “Broader External Classes” and “Equivalent External Classes”, Plato is also a: foaf:Person, a foaf:Agent and a cyc:Person.

This means that if my software agent doesn’t know what a “yago:Person100007846” means; it alternatively may know what a foaf:Person or a foaf:Agent means. And if it knows what it means, then it will be able to properly manipulate it: to display it in a special way; to refer to it as a person; so to do whatever it can with information about a “person”.

This exploding the domain works because these external ontologies classes have been referentially linked to a coherent conceptual structure.

The inference path

Let’s take a look at the fundamental reasons why the scenario above works.

First, you, and your system, have to trust the UMBEL named entities dictionaries and the UMBEL subject concept structure to perform the inference that I will explain below. If you and your system trust these linkage assertions, then you will be able to act according to the knowledge that has been inferred.

DBpedia individuals are linked to UMBEL named entities using the owl:sameAs property. This means that DBpedia individual A is identical (same semantic meaning) as the UMBEL named entity B. They both refer to the same individual.

This means that if B is defined as being of rdf:type sc:Person (“sc” stands for Subject Concept), then we can infer that A is defined as being of rdf:type sc:Person too.

If sc:Person is owl:equivalentClass with foaf:Person, we can infer that umbel:B is a foaf:Person, so that dbpedia:A is a foaf:Person too!

We can see similar examples for exploding the domains:

Exploring ConceptualWorks, PeriodicalSeries and NewspaperSeries

In my “UMBEL as a Coherent Framework to Support Ontology Development” blog post from last week, I showed how UMBEL subject concepts acted to create context for linked classes defined in external ontologies. Since DBpedia individuals are instances of classes, and that some of these classes are linked to UMBEL, these subject concept classes also give context to those individuals!

As some examples, go ahead and take a look at the “Named Entities for …” section of these detailed report pages:

The partial list of named entities that are returned by the detailed report viewer shows named entities that mainly come form Wikipedia (so that have links to DBpedia). These subject concepts gives a coherent context to those DBpedia individuals.

You should quickly notice, for example, that dbpedia:Kansas_City_Times is not only a sc:NewspaperSeries, a sc:PeriodicalSeries and a sc:ConceptualWork. You also notice that it is a frbr:Work, a bibo:Periodical and a bibo:Newspaper.

The context created by these UMBEL subject concepts gives not only new power to linked external classes, but also to their instances, such as these DBpedia individuals!

Conclusion

Contexts created by UMBEL subject concepts emerge by the power of linkage that exists between all the subject concepts, and the linkage between those subject concepts classes with classes defined in external ontologies. These contexts are consistent because of the coherence of the structure that is powered by OpenCyc (Cyc).

So far, most Linked Data has been about the “things” or named entities of the world, organized according to either Wikipedia categories or WordNet. These structures may have some internal structural consistency, but were never designed to play the role as a coherent reference framework. The coherence of UMBEL (based on the coherence of Cyc) is a powerful contextual lever for bringing order to this chaos.

Once information gets linked to a coherent framework such as UMBEL, things start to happen; powerful things. And, with each new linkage and relation to additional external ontologies, that power increases exponentially.

I wrote this blog post to show again the power of exploding the domain using DBpedia as an example, and how UMBEL can help to use and to leverage such big datasets.

Semantic Web, Bibliographic Ontology, UMBEL

UMBEL as a Coherent Framework to Support Ontology Development

There are multiple ways to represent the World we live in. Someone will think about something in a way, where someone else next to him will think about the same thing in another way. They will think about it in different ways: different characteristics, different ways to interact with it, different ways to use it, different ways to think about its composition, its relations with other things, and so on.

What is nice is that probably all of these different ways to think about this thing are good: after all, there are many ways to think about the same thing. It is this characteristic of thinking about things in different ways that leads to innovation.

But innovation is also not a game where anything goes. Things that work in the real world and in real ways need to adhere to certain rules, concepts, principles and theories. Continued innovation requires working within these coherent frameworks of natural relationships and order.

So, while a beautiful thing is that we can create new frameworks to think about things differently, not all of those frameworks work as well as others or make sense.

While it is conceivable that one could suppose any new framework or to think about things differently, frameworks that are actually useful should, among other things:

  1. Make sure the development of innovations within the framework is coherent
  2. Make sure the development of innovations within the framework is in context
  3. Help coordinate the development of projects and the cooperation of agents that work on these projects in order to achieve (1) and (2).

What seems clear to me is that the lack of any of (1), (2) or (3) makes innovations difficult and/or less powerful and less useful.

Why Would the Development Of Ontologies be Different?

The Semantic Web is often seen as a place where people describe things in multiple ways and where these things are more or less magically related together. For example, if you can’t properly describe something, you only have to create a new ontology, or to extend an existing one, and to publish it, et voilà!

The more I work in this field, the less I believe in this.

Remember my first point? People tend to think about things in different ways. The same logic applies to the development of ontologies (particularly in the development of ontologies!). Two ontologies, intended to describe the same things, can describe them in totally different ways. So, while some of the magic is that both ontologies can perfectly describe these things but only in different ways, there are other aspects that are not magical at all.

The problem here is to have at least one framework that helps people to develop ontologies such that the:

  1. Developed ontologies remain coherent
  2. Developed ontologies are in context
  3. Coordination of the development of ontologies and the cooperation of the agents working on these ontologies projects is effective to achieve goals (1) and (2).

This construct looks familiar, doesn’t it?

What I am proposing here is to use UMBEL as a coherent framework for ontology development. I am not saying that other frameworks can not play a guiding role in ontology development. But I am saying two things. First, some form of reference framework is necessary. And, second, truly useful frameworks must also be consistent and coherent.

What I am stressing here is the importance of conceptual frameworks to develop ontologies that can be used by people, companies and systems to properly and efficiently exchange data; and at some level, to reason over this data, too.

I think that the only way to do this in an efficient way is by grounding ontologies in such conceptual frameworks.

The ultimate goal is to make data exchange and data reasoning effective to people, organizations and systems that consume this sea of data. And I believe that it is not possible to achieve without grounding these efforts in a coherent, conceptual framework.

An Example at Work

Nothing is better than an example to shows the potential of UMBEL as a coherent framework to develop, and cross-link, ontologies.

Let’s take the Bibliographic Ontology as an example, which we just cross-linked to UMBEL in yesterday’s version 071 release. (Among a dozen other key ontologies; the list is getting pretty cool!)

The goal is to link BIBO classes to UMBEL subject concepts. The linkage is done using three properties: owl:equivalentClass, rdfs:subClassOf and umbel:isAligned.

But firstly, what is the goal here? We try to do two things when linking such ontologies to the UMBEL framework:

  1. To make sure the ontology (BIBO) is coherent and consistent with other existing ontologies that are linked to the framework (other such ontologies could be FOAF, SIOC, etc.)
  2. To make sure that the design choices of the developed ontology are consistent with the design choices of the framework, and the other ontologies that are linked to that framework.

Both points try to help achieve a grander vision: trying to make the semantic Web a little bit more coherent and easy to use and understand.

The BIBO Linkage

This figure shows how BIBO classes have been linked to UMBEL subject concepts in a set-like schema (click to enlarge the schema):

This schema shows what set belongs to what other set. That way, we can quickly notice that bibo:Patent is equivalent to umbel:Patent. We can also see that both classes belongs to (sub-class-of) bibo:Document, umbel:PropositionalConceptualWork and umbel:ConceptualWork, etc.

We have to keep one thing in mind that we made clear in the UMBEL technical documentation: UMBEL has its own view of the World. UMBEL’s subject concept structure is its view of the World. So these linkages are consistent within the UMBEL framework. Now, let’s continue.

The Context

Remember the three points above? What we have done here is to put BIBO in context. The context is created by the UMBEL conceptual framework. Once this is done, we can check for the coherence between BIBO, UMBEL and all the other ontologies that are linked to the framework.

The figure below shows the context created by UMBEL for BIBO, FOAF and SIOC (click to enlarge the schema):

Considering the current description of these three ontologies, we know that bibo:Document is equivalent to foaf:Document. But there exists no relationship between these two classes and sioc:Item and sioc:Post.

Intuitively we know that there are some relationships between all these classes (at least based on their label). We also have to keep in mind that it is not because a description is not defined (in RDF) that this description doesn’t exist (this is the open world assumption).

That being said, the figure above shows how UMBEL can help us to find such “non-described” relationship between classes of different ontologies. By contextualizing these three ontologies we now find that all these classes are sub-classes of umbel:ConceptualWork. We also know that some sioc:Post belongs to umbel:PropositionalConceptualWork (things written), just like some bibo:Document and foaf:Document stuff.

This means that this linkage — this contextualization — of external ontologies now gives us a common ground to play with: umbel:ConceptualWork. By querying this subject concept we can come up with a full range of related things: BIBO, SIOC and FOAF stuff.

For example, take a look at the section “Narrower External Classes” of the umbel:ConceptualWork detailed report and extend the list of external classes (click on the All Classes . . . link). All these things are conceptual works. This fact is explicated by UMBEL even if no relations, or a small number, is described in these ontologies, related to the other ontologies. Also take a look a the list for umbel:PropositionalConceptualWork.

This also shows the coherence of the design of each ontology.

The Coherence

So, once we have the context in place, we are on our way to achieve coherence. UMBEL is 100% based on OpenCyc and Cyc, which are internally consistent and coherent within themselves. We thus use these coherent frameworks to make the mappings to external ontologies coherent, too.

The equation is simple:

“a coherent framework” + “ontologies contextualized by this framework” = “more coherent ontologies”

This context and this coherence helps us to develop ontologies in two ways:

  1. It helps us to make sure the design of an ontology is good
  2. It helps us to make sure the designed ontology is coherent with other existing external ontologies

For example, when I linked BIBO classes to UMBEL subject concept classes, I found that a bibo:Series was a sub-class of umbel:ConceptualWorkSeries. Then I found that bibo:Periodical was the same thing as a umbel:PeriodicalSeries. However I had an issue: a bibo:Series was a sub-class of bibo:Collection and bibo:Periodical was also a sub-class-of bibo:Collection. Then I found that umbel:PeriodicalSeries was a sub-class of umbel:ConceptualWorkSeries. Then the question arose: why bibo:Periodical is not a sub-class of bibo:Series instead of bibo:Collection? This is what I will propose for the next iteration of BIBO.

Now, what about this helping to increase the coherence between external ontologies?

One good example I have is related to SIOC and FOAF. When I linked SIOC to UMBEL, Kingsley asked me why I didn’t link sioc:Item. My answer was simple: I cant do this since if I make this linkage, the coherence of UMBEL will be disturbed. The problem was that sioc:Item was a sub-class-of foaf:Document. But considering sioc:Items definition, and foaf:Documents definition and linkage to UMBEL, by making the linkage of sioc:Item to UMBEL would create some incoherence in the framework because of its relationship with foaf:Document.

From this discussion with Kingsley, this thread appeared on the SIOC mailing list, and the link from sioc:Item to foaf:Document has been removed.

These are the two general cases where UMBEL, as a coherent framework, can help the development of ontologies.

So, by achieving points (1) and (2), we are on the way to achieve point (3): the coordination of the development of ontologies and the cooperation of the agents working on these ontologies projects is effective to achieve goals (1) and (2).

The Final Mapped Relations

So, after application of this process and thinking, here are the UMBEL-BIBO mappings:

You can look at Appendix A to the UMBEL technical document (PDF or online); additionally you will see similar mappings for the existing dozen or so ontologies presently mapped to UMBEL. In combination, these give us the ability to Explode the Domain!

Descriptive Subject Concepts: Icing on the Cake

All of the description above relates to the mapping between the BIBO and UMBEL ontologies (and therefore other external ones). But, of course, we also now have the full scope of UMBEL subject concepts that we can also now apply to describe what the actual BIBO citations are about.

So, while we have structural ontology relationships that can be leveraged, we also now have a common vocabulary to describe the subject matter of what these citations are about. Use of these UMBEL subject concepts now allow us to cluster and retrieve citations by subject matter.

In this manner, UMBEL becomes a consistent tagging vocabulary for describing what citations and references are about. Want everything about weaving or galaxies or opera or anything, for example? Simply characterize your citations by appropriate UMBEL subjects and then use them as part of your retrieval filters.

This makes clear that UMBEL is some kind of Hydra: it can be used as a conceptual framework to help make ontologies (vocabularies) coherent and consistent, and at the same time, it can act as a conceptual description framework that describes the “matter” of things. This means that a subject concept can describe the “nature” of a thing and the “matter” of another thing at the same time.

Conclusion

UMBEL is becoming a wonderful tool that can be used in many ways. It is a vocabulary that is instantiated in a subject concept structure. It can be used not only to categorize things and to help find things, but also to define things, and to develop ontologies that define other things. We are on our way to achieve these three goals:

  1. Develop ontologies that are in context
  2. Develop ontologies that remain coherent
  3. Coordinate the development of ontologies and the cooperation of the agents working on these ontologies projects sufficient to achieve goals (1) and (2).

As usual, I’d like to thank my UMBEL co-editor and colleague, Mike Bergman, for his discussions and assistance on this material.